chercheur en entreprise, R&D du secteur privé*

Coordonnées

Doctorat

Intitulé : Biologie-Santé - Spécialité Microbiologie
1ère inscription en thèse : Décembre 2015
École doctorale : Sciences de la Vie et de la Santé
Date de soutenance de la thèse : 21 Novembre 2019
Sujet : Microbiote ancien versus microbiote contemporain : analyses culturomics, métagénomique et comparaisons génomiques
Directeur de thèse : Didier RAOULT
Co-directeur :
Unité de recherche : MEPHI - Microbes Evolution Phylogénie et Infections
Intitulé de l'équipe : MEPHI - E1 - Microbiote

Master

Intitulé : SCIENCES TECHNOLOGIE SANTE
Septembre 2015 - UNIVERSITE RENNES1

Langues vivantes

Anglais : B1 - Intermédiaire
Français : Maternel

Production scientifique

  • Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile.
    New Microbes and New Infections 2016
    Afouda Pamela, Ndongo Sokhna, Khelaifia Saber, Labas Noemie, Cadoret Frederic, Di Pinto Fabrizio, Delerce Jeremy, Raoult Didier, Million Matthieu
    https://www.ncbi.nlm.nih.gov/pubmed/28070336
  • Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics
    New Microbes and New Infections 2017
    Cadoret Frederic, Tidjani Alou Maryam , Afouda Pamela, Traore Sory Ibrahima, Bréchard Ludivine, Michelle Caroline, Di Pinto Fabrizio, Andrieu Claudia, Delerce Jeremy, Levasseur Anthony, Fournier Pierre-Edouard, Raoult Didier
    https://www.ncbi.nlm.nih.gov/pubmed/28706723
  • Draft Genome Sequence of Agrococcusbaldri Strain Marseille-P2731
    Genome Announcements 2017
    Afouda Pamela, Dubourg Gregory, Labas Noemie, Raoult Didier, Fournier Pierre-Edouard
    https://www.ncbi.nlm.nih.gov/pubmed/28280011
  • Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2T , the second Intestinimonas species cultured from the human gut.
    Microbiologyopen 2018
    Pamela Afouda, Guillaume A. Durand, Jean-Christophe Lagier, Noémie Labas, Fréderic Cadoret, Nicholas Armstrong, Didier Raoult, Grégory Dubourg
    https://www.ncbi.nlm.nih.gov/pubmed/29654664
  • 'Massilimalia timonensis' sp. nov., a new bacterium species isolated from human faeces after decontamination with alcohol.
    New microbes and new infections 2017
    Pamela Afouda, Grégory Dubourg, Frédéric Cadoret, Pierre- Edouard Fournier and Didier Raoult
    https://www.ncbi.nlm.nih.gov/pubmed/29379603
  • 'Lactobacillus timonensis' sp. nov., a new bacterial species isolated from the human gut.
    new microbes and new infections 2017
    Pamela Afouda, Pierre- Edouard Fournier, Didier Raoult, Vicky Merhej
    https://www.ncbi.nlm.nih.gov/pubmed/28794887
  • 'Bacillus massiliglaciei', a new bacterial species isolated from Siberian permafrost.
    new microbes and new infections 2016
    Pamela Afouda, Grégory Dubourg, Fréderic Cadoret, Pierre- Edouard Fournier, Didier Raoult.
    https://www.ncbi.nlm.nih.gov/pubmed/28053706
  • "Intestinimonas massiliensis" sp. nov, a new bacterium isolated from human gut.
    New microbes and new infections 2016
    Gullaume Durand, Pamela Afouda, Didier Raoult, Grégory Dubourg
    https://www.ncbi.nlm.nih.gov/pubmed/27830078
  • Class 1 integrons in Acinetobacter baumannii: a weak expression of gene cassettes to counterbalance the lack of LexA-driven integrase repression
    Int J Antimicrob Agents 2019
    Couvé-Deacon E, Jové T, Afouda P, Barraud O, Tilloy V, Scaon E, Hervé B, Burucoa C, Kempf M, Marcos JY, Ploy MC, Garnier F8.
    DOI: 10.1016/j.ijantimicag.2018.11.012
  • Description and genomic characterization of Massiliimalia massiliensis gen. nov., sp. nov., and Massiliimalia timonensis gen. nov., sp. nov., two new members of the family Ruminococcaceae isolated from the human gut.
    Antonie Van Leeuwenhoek 2019
    Afouda P, Traore SI, Dione N, Andrieu C, Tomei E, Richez M, Di Pinto F, Lagier JC, Dubourg G, Raoult D, Fournier PE.
    DOI: 10.1007/s10482-018-01223-x
  • Metagenomic and culturomic analysis of gut microbiota dysbiosis during Clostridium difficile infection.
    Sci Rep 2019
    Amrane S, Hocquart M, Afouda P, Kuete E, Pham TP, Dione N, Ngom II, Valles C, Bachar D, Raoult D, Lagier JC.
    DOI: 10.1038/s41598-019-49189-8