Madame PAMELA AFOUDA / PhD

Publications

• Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile.
  New Microbes and New Infections, 2016
  Afouda Pamela, Ndongo Sokhna, Khelaifia Saber, Labas Noemie, Cadoret Frederic, Di Pinto Fabrizio, Delerce Jeremy, Raoult Didier, Million Matthieu
  https://www.ncbi.nlm.nih.gov/pubmed/28070336
  
• Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics
  New Microbes and New Infections, 2017
  Cadoret Frederic, Tidjani Alou Maryam , Afouda Pamela, Traore Sory Ibrahima, Bréchard Ludivine, Michelle Caroline, Di Pinto Fabrizio, Andrieu Claudia, Delerce Jeremy, Levasseur Anthony, Fournier Pierre-Edouard, Raoult Didier
  https://www.ncbi.nlm.nih.gov/pubmed/28706723
  
• Draft Genome Sequence of Agrococcusbaldri Strain Marseille-P2731
  Genome Announcements, 2017
  Afouda Pamela, Dubourg Gregory, Labas Noemie, Raoult Didier, Fournier Pierre-Edouard
  https://www.ncbi.nlm.nih.gov/pubmed/28280011
  
• Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2T , the second Intestinimonas species cultured from the human gut.
  Microbiologyopen, 2018
  Pamela Afouda, Guillaume A. Durand, Jean-Christophe Lagier, Noémie Labas, Fréderic Cadoret, Nicholas Armstrong, Didier Raoult, Grégory Dubourg
  https://www.ncbi.nlm.nih.gov/pubmed/29654664
  
• 'Massilimalia timonensis' sp. nov., a new bacterium species isolated from human faeces after decontamination with alcohol.
  New microbes and new infections, 2017
  Pamela Afouda, Grégory Dubourg, Frédéric Cadoret, Pierre- Edouard Fournier and Didier Raoult
  https://www.ncbi.nlm.nih.gov/pubmed/29379603
  
• 'Lactobacillus timonensis' sp. nov., a new bacterial species isolated from the human gut.
  new microbes and new infections, 2017
  Pamela Afouda, Pierre- Edouard Fournier, Didier Raoult, Vicky Merhej
  https://www.ncbi.nlm.nih.gov/pubmed/28794887
  
• 'Bacillus massiliglaciei', a new bacterial species isolated from Siberian permafrost.
  new microbes and new infections, 2016
  Pamela Afouda, Grégory Dubourg, Fréderic Cadoret, Pierre- Edouard Fournier, Didier Raoult.
  https://www.ncbi.nlm.nih.gov/pubmed/28053706
  
• "Intestinimonas massiliensis" sp. nov, a new bacterium isolated from human gut.
  New microbes and new infections, 2016
  Gullaume Durand, Pamela Afouda, Didier Raoult, Grégory Dubourg
  https://www.ncbi.nlm.nih.gov/pubmed/27830078
  
• Class 1 integrons in Acinetobacter baumannii: a weak expression of gene cassettes to counterbalance the lack of LexA-driven integrase repression
  Int J Antimicrob Agents, 2019
  Couvé-Deacon E, Jové T, Afouda P, Barraud O, Tilloy V, Scaon E, Hervé B, Burucoa C, Kempf M, Marcos JY, Ploy MC, Garnier F8.
  DOI: 10.1016/j.ijantimicag.2018.11.012
  
• Description and genomic characterization of Massiliimalia massiliensis gen. nov., sp. nov., and Massiliimalia timonensis gen. nov., sp. nov., two new members of the family Ruminococcaceae isolated from the human gut.
  Antonie Van Leeuwenhoek, 2019
  Afouda P, Traore SI, Dione N, Andrieu C, Tomei E, Richez M, Di Pinto F, Lagier JC, Dubourg G, Raoult D, Fournier PE.
  DOI: 10.1007/s10482-018-01223-x
  
• Metagenomic and culturomic analysis of gut microbiota dysbiosis during Clostridium difficile infection.
  Sci Rep, 2019
  Amrane S, Hocquart M, Afouda P, Kuete E, Pham TP, Dione N, Ngom II, Valles C, Bachar D, Raoult D, Lagier JC.
  DOI: 10.1038/s41598-019-49189-8